plotSpliceDGE

<code>GLMLRT</code> object produced by <code>diffSpliceDGE</code>.

character string, ID of the gene to plot.

geneid

integer, if <code>geneid=NULL</code> then this ranked gene will be plotted.

rank

numeric, mark exons with false discovery rate less than this cutoff.


Plot exons of differentially spliced gene.


Differential expression analysis of RNA-seq and digital gene expression profiles with biological replication.  Uses empirical Bayes estimation and exact tests based on the negative binomial distribution.  Also useful for differential signal analysis with other types of genome-scale count data.

plotSpliceDGE: Plot exons on differentially spliced gene

Description

Usage

Arguments

Value

Details

See Also