nice_print

Prints the output of getNiceAlignment() in a visually informative format in order to inspect the alignment

Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M. Šošić, M. Šikić, <doi:10.1093/bioinformatics/btw753>.

Evan Biederstedt

edlibR

R Integration for Edlib, the C/C++ Library for Exact Pairwise
Sequence Alignment using Edit (Levenshtein) Distance

Martin Šošić

Travers Ching

nice_print function

<dl><dt>niceAlignment</dt>
<dd>list Output of the method getNiceAlignment()</dd></dl>

Arguments

Prints the output of getNiceAlignment() in a visually informative format in order to inspect the alignment — nice_print

<dl>

<dt>niceAlignment</dt>
<dd>list Output of the method getNiceAlignment()</dd>

</dl>

nice_print: Prints the output of getNiceAlignment() in a visually informative format in order to inspect the alignment

Description

Usage

Value

Arguments

Examples