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eemR (version 0.1.0)
Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Description
Provides various tools to calculate EEM metrics and preprocess EEM for PARAFAC analysis.
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Install
install.packages('eemR')
Monthly Downloads
293
Version
0.1.0
License
GPL (>= 2)
Issues
14
Pull Requests
0
Stars
18
Forks
10
Repository
https://github.com/PMassicotte/eemR
Maintainer
Philippe Massicotte
Last Published
November 19th, 2015
Functions in eemR (0.1.0)
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summary.eemlist
Display summary of an eemlist object
plot.eem
Surface plot of eem
eem_set_wavelengths
Set Excitation and/or Emission wavelengths
eem_read
Read excitation-emission fluorecence matrix (eem)
eem_remove_scattering
Remove Raman and Rayleigh scattering
eem
eem constructor
read_lines
Faster read lines
absorbance
CDOM absorbance data.
eem_fluorescence_index
Calculate the fluorescence index (FI)
eem_raman_normalisation
Fluorescence Intensity Calibration Using the Raman Scatter Peak of Water
eem_biological_index
Calculate the biological fluorescence index (BIX)
eem_cut
Cut emission and/or excitation wavelengths from EEMs
eem_inner_filter_effect
Inner-filter effect correction
plot.eemlist
Surface plot of eem
eem_remove_blank
Blank correction
eem_coble_peaks
Extrace fluorescence peaks
summary.eem
Display summary of an eem object
eem_extract
Extract EEM samples
eem_humification_index
Calculate the fluorescence humification index (HIX)
eem_export_matlab
Export EEMs to Matlab