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eemR (version 0.1.2)

Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data

Description

Provides various tools to calculate EEM fluorescence metrics and preprocess EEM for PARAFAC analysis.

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Version

Install

install.packages('eemR')

Monthly Downloads

441

Version

0.1.2

License

GPL (>= 2)

Issues

14

Pull Requests

0

Stars

20

Forks

11

Maintainer

Philippe Massicotte

Last Published

February 4th, 2016

Functions in eemR (0.1.2)

eem_inner_filter_effect

Inner-filter effect correction
plot.eemlist

Surface plot of eem
eem_biological_index

Calculate the biological fluorescence index (BIX)
eem_raman_normalisation

Fluorescence Intensity Calibration Using the Raman Scatter Peak of Water
eem_humification_index

Calculate the fluorescence humification index (HIX)
eem_cut

Cut emission and/or excitation wavelengths from EEMs
plot.eem

Surface plot of eem
eem_sample_names

The names of an eem or eemlist objects
eem_bind

Bind eem or eemlist
eem_set_wavelengths

Set Excitation and/or Emission wavelengths
eem_export_matlab

Export EEMs to Matlab
eem_coble_peaks

Extract fluorescence peaks
eem_remove_blank

Blank correction
eem_fluorescence_index

Calculate the fluorescence index (FI)
eem_sample_names<-

Set the sample names of an eem or eemlist objects
eem_remove_scattering

Remove Raman and Rayleigh scattering
summary.eem

Display summary of an eem object
eem_extract

Extract EEM samples
summary.eemlist

Display summary of an eemlist object
eem_read

Read excitation-emission fluorecence matrix (eem)
eem

eem constructor
absorbance

CDOM absorbance data.