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eemR (version 0.1.2)
Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
Description
Provides various tools to calculate EEM fluorescence metrics and preprocess EEM for PARAFAC analysis.
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Install
install.packages('eemR')
Monthly Downloads
402
Version
0.1.2
License
GPL (>= 2)
Issues
14
Pull Requests
0
Stars
18
Forks
10
Repository
https://github.com/PMassicotte/eemR
Maintainer
Philippe Massicotte
Last Published
February 4th, 2016
Functions in eemR (0.1.2)
Search functions
eem_inner_filter_effect
Inner-filter effect correction
plot.eemlist
Surface plot of eem
eem_biological_index
Calculate the biological fluorescence index (BIX)
eem_raman_normalisation
Fluorescence Intensity Calibration Using the Raman Scatter Peak of Water
eem_humification_index
Calculate the fluorescence humification index (HIX)
eem_cut
Cut emission and/or excitation wavelengths from EEMs
plot.eem
Surface plot of eem
eem_sample_names
The names of an eem or eemlist objects
eem_bind
Bind eem or eemlist
eem_set_wavelengths
Set Excitation and/or Emission wavelengths
eem_export_matlab
Export EEMs to Matlab
eem_coble_peaks
Extract fluorescence peaks
eem_remove_blank
Blank correction
eem_fluorescence_index
Calculate the fluorescence index (FI)
eem_sample_names<-
Set the sample names of an eem or eemlist objects
eem_remove_scattering
Remove Raman and Rayleigh scattering
summary.eem
Display summary of an eem object
eem_extract
Extract EEM samples
summary.eemlist
Display summary of an eemlist object
eem_read
Read excitation-emission fluorecence matrix (eem)
eem
eem constructor
absorbance
CDOM absorbance data.