get_hmmer_path

Which command to get the path for. For example "hmmsearch".

command

If <code>TRUE</code>, throw an error if HMMER is not installed.

error

If <code>TRUE</code>, print progress reports.

verbose

Where to look for HMMER. By default it will look on the search
path.

path

Check if HMMER is installed and return path to an executable

internal

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>.

get_hmmer_path: Check if HMMER is installed and return path

Description

Usage

Arguments

Value