plot.confint.eicm

Plot EICM estimates and confidence intervals, in a dot-and-whisker plot.

Model fitting and species biotic interaction network topology selection for explicit
interaction community models. Explicit interaction community models are an extension of binomial
linear models for joint modelling of species communities, that incorporate both the effects of
species biotic interactions and the effects of missing covariates. Species interactions are modelled
as direct effects of each species on each of the others, and are estimated alongside the effects of
missing covariates, modelled as latent factors. The package includes a penalized maximum likelihood
fitting function, and a genetic algorithm for selecting the most parsimonious species interaction
network topology.

Miguel Porto

eicm

Explicit Interaction Community Models

Pedro Beja

plot.confint.eicm function

<dl><dt>x</dt>
<dd>a eicm.confint object</dd>
<dt>truemodel</dt>
<dd>for validation purposes only. The true model used to simulate data.</dd>
<dt>...</dt>
<dd>other arguments passed to other functions.</dd></dl>

Arguments

Plot EICM estimates and confidence intervals — plot.confint.eicm

<dl>

<dt>x</dt>
<dd>a eicm.confint object</dd>


<dt>truemodel</dt>
<dd>for validation purposes only. The true model used to simulate data.</dd>


<dt>...</dt>
<dd>other arguments passed to other functions.</dd>

</dl>

plot.confint.eicm: Plot EICM estimates and confidence intervals

Description

Usage

Value

Arguments