ALLModules

ALLModulesSmall


  The Iterative Signature Algorithm (ISA) is a biclustering
  method. <code>ALLModules</code> and <code>ALLModulesSmall</code> are example ISA
  biclusters (=modules) found in the ALL data set.


datasets

The Iterative Signature Algorithm (ISA) is a biclustering
method; it finds correlated blocks (transcription modules) in gene
expression (or other tabular) data. The ISA is capable of finding
overlapping modules and it is resilient to noise. This package
provides a convenient interface to the ISA, using standard
BioConductor data structures; and also contains various
visualization tools that can be used with other biclustering
algorithms.

Gabor Csardi

eisa

Expression data analysis via the Iterative Signature Algorithm

ALLModules function

Both <code>ALLModules</code> and <code>ALLModulesSmall</code> are instances
  of the <code>ISAModules</code> class.

Format

<code>ISAModules</code> was generated by calling <code>ISA</code> on the
  <code>ALL</code> data set, using the default
  parameters. <code>ISAModulesSmall</code> was generated the same way, but
  with gene threshold 2.7 and condition threshold 1.4 only.

Source

The Iterative Signature Algorithm (ISA) is a biclustering
  method. <code>ALLModules</code> and <code>ALLModulesSmall</code> are example ISA
  biclusters (=modules) found in the ALL data set.

ALLModules: ISA transcription modules for the ALL data

Description

Usage

Arguments

Format

Source

References

See Also

Examples