eiwild (version 0.6.6)

plot.eiwild: Plot diagnostics for an eiwild Object

Description

plot diagnostics for an eiwild Object containing autocorrelation plots, density plots and trace using functions of coda package

Usage

## S3 method for class 'eiwild':
plot(x, whichPlot = NULL, whichParam = "cellCounts",
  whichCell = NULL, layout = TRUE, ...)

Arguments

x

an object of class eiwild

whichPlot

which type of plot. see Details for more information

whichParam

which parameter should be plotted "alphaDraws" or "cellCounts"

whichCell

which cell to plot

layout

logical if automatic layout of plot should be made with help of par=mfrow()

...

further graphical parameters given to correspondent coda function

Details

plot.eiwild uses the plot diagnostic functions of the coda package. The default is NULL which passes arguments to plot.mcmc:

• 1passes arguments totraceplot
• 2passes arguments toautocorr.plot
• 3passes arguments todensplot
• 4calculates and plots rolling mean

See Also

plot.mcmc mcmc

Examples

# loading some fake election data
data(topleveldat)
form <- cbind(CSU_2, SPD_2, LINK_2, GRUN_2) ~ cbind(CSU_1, SPD_1, Link_1)
set.seed(1234)
res <- indAggEi(form=form, aggr=aggr, indi=indi, IDCols=c("ID","ID"),
                sample=1000, thinning=2, burnin=100,verbose=100)

plot(res, whichPlot=1)
plot(res, whichPlot=2)
plot(res, whichPlot=3)
plot(res, whichPlot=4)

plot(res, whichPlot=1, whichCell=c(1,4,5))
plot(res, whichPlot=2, whichCell=c(1,4,5))
plot(res, whichPlot=3, whichCell=c(1,4,5))
plot(res, whichPlot=4, whichCell=c(1,4,5))

plot(res, whichPlot=1, whichCell=c(1))
plot(res, whichPlot=2, whichCell=c(1))
plot(res, whichPlot=3, whichCell=c(1))
plot(res, whichPlot=4, whichCell=c(1))

plot(res, whichPlot=1, whichParam="alphaDraws")
plot(res, whichPlot=2, whichParam="alphaDraws")
plot(res, whichPlot=3, whichParam="alphaDraws")
plot(res, whichPlot=4, whichParam="alphaDraws")

par(mfrow=c(2,2))
plot(res, whichPlot=1, whichCell=1, layout=FALSE)
plot(res, whichPlot=2, whichCell=1, layout=FALSE)
plot(res, whichPlot=3, whichCell=1, layout=FALSE)
plot(res, whichPlot=4, whichCell=1, layout=FALSE)