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elaborator (version 1.1)

A 'shiny' Application for Exploring Laboratory Data

Description

A novel concept for generating knowledge and gaining insights into laboratory data. You will be able to efficiently and easily explore your laboratory data from different perspectives.

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Version

Install

install.packages('elaborator')

Monthly Downloads

177

Version

1.1

License

GPL-3

Maintainer

Steffen Jeske

Last Published

February 22nd, 2021

Functions in elaborator (1.1)

elaborator_calculate_spearman_distance

Calculates the distance matrix based on Spearman's correlation coefficient
elaborator_calculate_ref_pattern

Returns row of a matrix containing all combinations of elements 0 and 1 of a pre-specified length
elaborator_perform_binomial_test

Performs binomial test for changes of a laboratory parameter between two visits
elaborator_perform_ttest

Performs t-test for changes of a laboratory parameter between two visits
elaborator_server

Server part of the elaborator application
elaborator_plot_ref_pattern

Generates the reference-value based pattern analysis plots in the shiny app elaborator
elaborator_draw_curved_line

Draws a curved line from start to end point
elaborator_plot_quant_trends

Generates boxplots for each treatment group and laboratory parameter
elaborator_draw_dots

Draws a circle with specified size, coordinates and color in a plot window
elaborator_plot_qual_trends

Generates the qualitative trends analysis plots in the shiny app elaborator
elaborator_draw_ref_pattern

Generates tree diagram according to the reference-value based pattern analysis
elaborator_draw_scheme_preview

Color scheme preview
elaborator_transform_transparent

Calculates the transparent version of a given color
elaborator_calculate_pattern

Returns row of a matrix containing all combinations of elements -1, 0, 1 of a pre-specified length
elaborator_calculate_pattern_number

Pattern number for input patterns defined by decreases, stability and increases
launch_elaborator

Launches the elaborator application
elaborator_calculate_color_index

Calculates the index of the color vector in the qualitative trend analysis plot
colBoxplot4

User Interface of the elaborator application
elaborator_derive_test_values

Derives p-values and estimates for sign test or t-test
elaborator_derive_equal_values

Returns indices for all elements of a vector x that are contained in another vector y