get_x_axis_values

table object, the result of using <a rd-options="base" href="/link/table?package=emba&version=0.1.1&to=base" data-mini-rdoc="base::table">table</a> on
a (numeric) vector. Usually it represents some models statistics summary -
counts for each TP prediction value for example.

models.stats

logical. Is there one NaN category?
(check is done before on the names attribute of the <code>models.stats</code>)

there.is.one.NaN.category

logical. If TRUE, the values of the x-axis will be trimmed
to 3 digits after the decimal point. Otherwise, they will be returned as they
are.

cont.values

This function returns the x-axis values that are going to be used by
<a rd-options="emba" href="/link/make_barplot_on_models_stats?package=emba&version=0.1.1&to=emba" data-mini-rdoc="emba::make_barplot_on_models_stats">make_barplot_on_models_stats</a> to render the bar plot.

Analysis and visualization of an ensemble of boolean models for
biomarker discovery in cancer cell networks. The package allows to easily
import the data results of a software pipeline that predicts synergistic drug
combinations in cancer cell lines, developed by the DrugLogics research group
in NTNU. It has generic functions that can be used to split a boolean model
dataset to model groups with regards to the models predictive performance (number of true
positive predictions or Matthews correlation coefficient score) or synergy prediction based on a given set
of observed synergies and find the average activity difference per network
node between all group pairs. Thus, given user-specific thresholds,
important nodes (biomarkers) can be accessed in the sense that they make the
models predict specific synergies (synergy biomarkers) or have better
performance in general (performance biomarkers). Lastly, if the
boolean models have a specific equation form and differ only in their link operator,
link operator biomarkers can also be assessed.

John Zobolas

emba

Ensemble Boolean Model Biomarker Analysis

get_x_axis_values function

table object, the result of using <a rd-options='base' href='table'>table</a> on
a (numeric) vector. Usually it represents some models statistics summary -
counts for each TP prediction value for example.

This function returns the x-axis values that are going to be used by
<a rd-options='emba' href='make_barplot_on_models_stats'>make_barplot_on_models_stats</a> to render the bar plot.

get_x_axis_values: Get the refined x-axis values

Description

Usage

Arguments