emba (version 0.1.1)

plot_avg_link_operator_diff_graphs: Plot the graphs from an average link operator differences matrix

Description

This function presents a convenient way to use many times the plot_avg_link_operator_diff_graph function.

Usage

plot_avg_link_operator_diff_graphs(net, diff.mat, layout)

Arguments

net

igraph graph object

diff.mat

a matrix whose rows are vectors of average node link operator differences between two groups of models based on some kind of classification (e.g. number of TP predictions) and whose names are set in the rownames attribute of the matrix (usually denoting the different classification groups, e.g. (1,2) means the models that predicted 1 TP synergy vs the models that predicted 2 TP synergies, if the classification is done by number of TP predictions). The columns represent the network's node names.

layout

a (nx2) numeric matrix of x-y coordinates (2 columns) for each of the nodes (n) in the net igraph object

See Also

Other network plotting functions: plot_avg_link_operator_diff_graph, plot_avg_state_diff_graph_vis, plot_avg_state_diff_graphs, plot_avg_state_diff_graph