emcAdr (version 1.2)

computeMetrics_size2: Function used in the reference article to compare diverse Disproportionality Analysis metrics

Description

Function used in the reference article to compare diverse Disproportionality Analysis metrics

Usage

computeMetrics_size2(CocktailList, ATCtree, observations, num_thread = 1L)

Value

Multiple DA metrics computed on CocktailList cocktails

Arguments

CocktailList

: A list of cocktails on which the Disproportionality analysis metrics should be computed

ATCtree

: ATC tree with upper bound of the DFS (without the root)

observations

: observation of the AE based on the medications of each patients (a DataFrame containing the medication on the first column and the ADR (boolean) on the second) on which we want to compute the risk distribution

num_thread

: Number of thread to run in parallel if openMP is available, 1 by default

Examples

# \donttest{
data("ATC_Tree_UpperBound_2024")
data("FAERS_myopathy")

cocktails = list(c(561, 904),
               c(1902, 4585)) # only size 2 cocktails allowed for this function

scores_of_cocktails = computeMetrics_size2(CocktailList = cocktails,
                              ATCtree = ATC_Tree_UpperBound_2024, 
                              observations = FAERS_myopathy[1:100,])
# }