emcAdr (version 1.2)

compute_hypergeom_on_list: Function used to compute the Hypergeometric score on a list of cocktails

Description

Function used to compute the Hypergeometric score on a list of cocktails

Usage

compute_hypergeom_on_list(cocktails, ATCtree, observations, num_thread = 1L)

Value

Hypergeometric score among "cocktails" parameters

Arguments

cocktails

: A list containing cocktails in the form of vector of integers (ATC index)

ATCtree

: ATC tree with upper bound of the DFS (without the root)

observations

: observation of the AE based on the medications of each patients (a DataFrame containing the medication on the first column and the ADR (boolean) on the second) on which we want to compute the risk distribution

num_thread

: Number of thread to run in parallel if openMP is available, 1 by default

Examples

# \donttest{
data("ATC_Tree_UpperBound_2024")
data("FAERS_myopathy")

cocktails = list(c(561, 904),
               c(1902, 4585))

Hypergeom_of_cocktails = compute_hypergeom_on_list(cocktails = cocktails,
                              ATCtree = ATC_Tree_UpperBound_2024, 
                              observations = FAERS_myopathy)
# }