emcAdr (version 1.2)

print_csv: Print every cocktails found during the genetic algorithm when used with the hyperparam_test_genetic_algorithm function. This enables to condense the solutions found in each files by collapsing similar cocktail in a single row by cocktail.

Description

Print every cocktails found during the genetic algorithm when used with the hyperparam_test_genetic_algorithm function. This enables to condense the solutions found in each files by collapsing similar cocktail in a single row by cocktail.

Usage

print_csv(
  input_filenames,
  observations,
  repetition,
  ATCtree,
  csv_filename = "solutions.csv"
)

Value

No return value, should process the output of the genetic algorithm in files produced by hyperparam_test_genetic_algorithm and output a summary csv file. The csv file is outputed in current directory and named after the csv_filename variable (solutions.csv by default).

Arguments

input_filenames

: A List containing filename of hyperparam_test_genetic_algorithm output file

observations

: observation of the AE based on the medications of each patients (a DataFrame containing the medication on the first column and the ADR (boolean) on the second) on which we want to compute the risk distribution

repetition

: The parameter nb_test_desired used in the hyperparam test function

ATCtree

: ATC tree with upper bound of the DFS (without the root)

csv_filename

: Name of the output file, "solutions.csv" by default

Examples

# \donttest{
 data("ATC_Tree_UpperBound_2024")
 data("FAERS_myopathy")
 files = c('250e_700ind_0.2mr_0ne_2alpha.txt') # results of hyperparam_test_genetic_algorithm

 print_csv(input_filenames = files, observations = FAERS_myopathy,
          repetition = 5, ATCtree = ATC_Tree_UpperBound_2024)
# }