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emdbook (version 1.0.8.1)

Ecological models and data (book support)

Description

Auxiliary functions and data sets for _Ecological Models and Data_, a book presenting maximum likelihood estimation and related topics for ecologists (in preparation for Princeton University Press)

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Version

Install

install.packages('emdbook')

Monthly Downloads

6,844

Version

1.0.8.1

License

GPL

Maintainer

Ben Bolker

Last Published

July 4th, 2023

Functions in emdbook (1.0.8.1)

Fir

Data on fir (Abies) life history
Lily

Glacier lily occurrence and fecundity data
HPDregionplot

Plot highest posterior density region
Myxo

Myxomatosis titer data
Wrasse

Reef fish (wrasse) data
credint

Calculate Bayesian credible intervals
Reedfrog

Data on reed frog predation experiments
lambertW

Lambert W function
get.emdbook.packages

install and update auxiliary packages
dzinbinom

Zero-inflated negative binomial distribution
calcslice

Negative log-likelihood slice
scinot

Scientific notation as LaTeX/expression()
deltamethod

Delta method functions
curve3d

Plot a 3D surface representing a 2D curve
dchibarsq

Mixed chi-squared distributions
lseq

Log-spaced sequence
emdbook-package

ecological models and data
dbetabinom

Beta-binomial distribution
SeedPred

Seed predation data set from Duncan and Duncan 2000
apply2d

Apply a function to a combination of vectors
lump.mcmc.list

Combine multiple MCM chains
metropSB

Metropolis-Szymura-Barton algorithm
trcoef

Transform coefficients
as.mcmc.bugs

Convert WinBUGS output to CODA format
gridsearch2d

Graphical grid search in 2D
dmvnorm

Multivariate normal distribution density function
perturb.params

Create a list of perturbed parameters