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emdbook (version 1.3.12)

Support Functions and Data for "Ecological Models and Data"

Description

Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

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Version

Install

install.packages('emdbook')

Monthly Downloads

6,279

Version

1.3.12

License

GPL

Maintainer

Ben Bolker

Last Published

February 19th, 2020

Functions in emdbook (1.3.12)

calcslice

Negative log-likelihood slice
dzinbinom

Zero-inflated negative binomial distribution
dmvnorm

Multivariate normal distribution density function
contour3d

Superimpose contour lines on a 3D plot
dbetabinom

Beta-binomial distribution
dchibarsq

Mixed chi-squared distributions
metropSB

Metropolis-Szymura-Barton algorithm
credint

Calculate Bayesian credible intervals
scinot

Scientific notation as LaTeX/expression()
perturb.params

Create a list of perturbed parameters
trcoef

Transform coefficients
SeedPred

Seed predation data set from Duncan and Duncan 2000
emdbook-package

tools:::Rd_package_title("emdbook")
curve3d

Plot a 3D surface representing a 2D curve
get.emdbook.packages

install and update auxiliary packages
lseq

Log-spaced sequence
deltamethod

Delta method functions
lambertW

Lambert W function
lump.mcmc.list

Utility functions for mcmc objects
deprecated

Deprecated (obsolete) functions
gridsearch2d

Graphical grid search in 2D
Fir

Data on fir (Abies) life history
apply2d

Apply a function to a combination of vectors
GobySurvival

Goby (reef fish) survivorship data
as.mcmc.bugs

Convert WinBUGS output to CODA format
HPDregionplot

Plot highest posterior density region
Myxo

Myxomatosis titer data
Reedfrog

Data on reed frog predation experiments
Lily

Glacier lily occurrence and fecundity data
Damselfish

Reef fish (damselfish) data