enrichR (version 3.0)

printEnrich: printEnrich

Description

Print Enrichr output.

Usage

printEnrich(data, prefix = "enrichr", showTerms = NULL, columns = c(1:9))

Arguments

data

(Required). Output from Enrichr function.

prefix

(Optional). Prefix of output file. Default is "enrichr".

showTerms

(Optional). Number of terms to show. Default is NULL to print all terms.

columns

(Optional). Columns from each entry of data. Default is c(1:9) to print all columns. 1-"Term", 2-"Overlap", 3-"P.value", 4-"Adjusted.P.value" 5-"Old.P.value", 6-"Old.Adjusted.P.value" 7-"Odds.Ratio" 8-"Combined.Score" 9-"Combined.Score"

Author

Wajid Jawaid

I-Hsuan Lin

Details

Print Enrichr output to text file.

Examples

if (getOption("enrichR.live")) {
  enrichRLive <- TRUE
  dbs <- listEnrichrDbs()
  if(is.null(dbs)) enrichRLive <- FALSE
  dbs <- c("GO_Molecular_Function_2018", "GO_Cellular_Component_2018", 
           "GO_Biological_Process_2018")
  enriched <- enrichr(c("Runx1", "Gfi1", "Gfi1b", "Spi1", "Gata1", "Kdr"), dbs)
  if (enrichRLive) printEnrich(enriched)
}