gsfilter

filter enriched result by gene set size or gene count

Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.

Guangchuang Yu

enrichit

'C++' Implementations of Functional Enrichment Analysis

gsfilter function

<dl><dt>x</dt>
<dd>instance of enrichResult or compareClusterResult</dd>
<dt>by</dt>
<dd>one of 'GSSize' or 'Count'</dd>
<dt>min</dt>
<dd>minimal size</dd>
<dt>max</dt>
<dd>maximal size</dd></dl>

Arguments

Author

gsfilter — gsfilter

<dl>

<dt>x</dt>
<dd>instance of enrichResult or compareClusterResult</dd>


<dt>by</dt>
<dd>one of 'GSSize' or 'Count'</dd>


<dt>min</dt>
<dd>minimal size</dd>


<dt>max</dt>
<dd>maximal size</dd>

</dl>

gsfilter: gsfilter

Description

Usage

Value

Arguments

Author