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enrichit (version 0.1.2)

ora_gson: ora-gson

Description

interal method for enrichment analysis

Usage

ora_gson(
  gene,
  pvalueCutoff,
  pAdjustMethod = "BH",
  universe = NULL,
  minGSSize = 10,
  maxGSSize = 500,
  qvalueCutoff = 0.2,
  gson
)

Value

A enrichResult instance.

Arguments

gene

a vector of entrez gene id.

pvalueCutoff

P-value cutoff.

pAdjustMethod

P-value adjustment method (e.g., "BH").

universe

background genes, default is the intersection of the 'universe' with genes that have annotations. Users can set options(enrichment_force_universe = TRUE) to force the 'universe' untouched.

minGSSize

minimal size of each geneSet for analyzing

maxGSSize

maximal size of each geneSet for analyzing

qvalueCutoff

cutoff of qvalue

gson

A GSON object containing gene set information.

Author

Guangchuang Yu https://yulab-smu.top

Details

using the hypergeometric model