enrichplot (version 1.13.1.994)

gseaplot2: gseaplot2

Description

GSEA plot that mimic the plot generated by broad institute's GSEA software

Usage

gseaplot2(
  x,
  geneSetID,
  title = "",
  color = "green",
  base_size = 11,
  rel_heights = c(1.5, 0.5, 1),
  subplots = 1:3,
  pvalue_table = FALSE,
  ES_geom = "line"
)

Arguments

x

gseaResult object

geneSetID

gene set ID

title

plot title

color

color of running enrichment score line

base_size

base font size

rel_heights

relative heights of subplots

subplots

which subplots to be displayed

pvalue_table

whether add pvalue table

ES_geom

geom for plotting running enrichment score, one of 'line' or 'dot'

Value

plot