runEnsDbApp


		Additional arguments passed to the <code><a rd-options="shiny" href="/link/runApp?package=ensembldb&version=1.2.0&to=shiny" data-mini-rdoc="shiny::runApp">runApp</a></code> function
		from the <code>shiny</code> package.
	


	This function starts the interactive <code>EnsDb</code> shiny web application that
	allows to look up gene/transcript/exon annotations from an <code>EnsDb</code>
	annotation package installed locally.


data

shiny

The package provides functions to create and use
transcript centric annotation databases/packages. The
annotation for the databases are directly fetched from Ensembl
using their Perl API. The functionality and data is similar to
that of the TxDb packages from the GenomicFeatures package,
but, in addition to retrieve all gene/transcript models and
annotations from the database, the ensembldb package provides
also a filter framework allowing to retrieve annotations for
specific entries like genes encoded on a chromosome region or
transcript models of lincRNA genes.

Johannes Rainer

ensembldb

Utilities to create and use an Ensembl based annotation database

runEnsDbApp function


		Additional arguments passed to the <code><a rd-options='shiny' href='runApp'>runApp</a></code> function
		from the <code>shiny</code> package.
	

runEnsDbApp: Search annotations interactively

Description

Usage

Arguments

Value

Details

See Also