gg_13_8_train_set_97

All unique taxonomic assignments from the GreenGenes v13.8 clusted at 97%

datasets

Creates ensemble taxonomic assignments of amplicon sequencing data
in R using outputs of multiple taxonomic assignment algorithms and/or
reference databases. Includes flexible algorithms for mapping taxonomic
nomenclatures onto one another and for computing ensemble taxonomic
assignments.

Dylan Catlett

ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data

gg_13_8_train_set_97 function

^ dataframe with 4163 rows and 7 columns<dl class="dl-horizontal">
<dt>domain</dt><dd>domain assignments</dd>
<dt>phylum</dt><dd>phylum assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
<dt>species</dt><dd>genus assignments</dd>
</dl>

Format

All unique taxonomic assignments from the GreenGenes v13.8 clusted at 97% — gg_13_8_train_set_97

^ dataframe with 4163 rows and 7 columns<dl class='dl-horizontal'>
<dt>domain</dt><dd>domain assignments</dd>
<dt>phylum</dt><dd>phylum assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
<dt>species</dt><dd>genus assignments</dd>
</dl>

gg_13_8_train_set_97: All unique taxonomic assignments from the GreenGenes v13.8 clusted at 97%

Description

Usage

Arguments

Format