idtax.silva.sample

Example output of DECIPHER idtaxa function with silva taxonomy

datasets

Creates ensemble taxonomic assignments of amplicon sequencing data
in R using outputs of multiple taxonomic assignment algorithms and/or
reference databases. Includes flexible algorithms for mapping taxonomic
nomenclatures onto one another and for computing ensemble taxonomic
assignments.

Dylan Catlett

ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data

idtax.silva.sample function

^ list with 5 elements<dl class="dl-horizontal">
<dt>1</dt><dd>tax data for ASV 1</dd>
<dt>2</dt><dd>tax data for ASV 2</dd>
<dt>3</dt><dd>tax data for ASV 3</dd>
<dt>4</dt><dd>tax data for ASV 4</dd>
<dt>5</dt><dd>tax data for ASV 5</dd>
</dl>

Format

Example output of DECIPHER idtaxa function with silva taxonomy — idtax.silva.sample

^ list with 5 elements<dl class='dl-horizontal'>
<dt>1</dt><dd>tax data for ASV 1</dd>
<dt>2</dt><dd>tax data for ASV 2</dd>
<dt>3</dt><dd>tax data for ASV 3</dd>
<dt>4</dt><dd>tax data for ASV 4</dd>
<dt>5</dt><dd>tax data for ASV 5</dd>
</dl>

idtax.silva.sample: Example output of DECIPHER idtaxa function with silva taxonomy

Description

Usage

Arguments

Format