pr2v4.12.0

All unique taxonomic assignments from the pr2 reference database v4.12.0

datasets

Creates ensemble taxonomic assignments of amplicon sequencing data
in R using outputs of multiple taxonomic assignment algorithms and/or
reference databases. Includes flexible algorithms for mapping taxonomic
nomenclatures onto one another and for computing ensemble taxonomic
assignments.

Dylan Catlett

ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data

pr2v4.12.0 function

^ dataframe with 45352 rows and 8 columns<dl class="dl-horizontal">
<dt>kingdom</dt><dd>kingdom assignments</dd>
<dt>supergroup</dt><dd>supergroup assignments</dd>
<dt>division</dt><dd>division assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
<dt>species</dt><dd>species assignments</dd>
</dl>

Format

All unique taxonomic assignments from the pr2 reference database v4.12.0 — pr2v4.12.0

^ dataframe with 45352 rows and 8 columns<dl class='dl-horizontal'>
<dt>kingdom</dt><dd>kingdom assignments</dd>
<dt>supergroup</dt><dd>supergroup assignments</dd>
<dt>division</dt><dd>division assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
<dt>species</dt><dd>species assignments</dd>
</dl>

pr2v4.12.0: All unique taxonomic assignments from the pr2 reference database v4.12.0

Description

Usage

Arguments

Format