silva.nr.v138

All unique taxonomic assignments from the Silva SSU nr database v138

datasets

Creates ensemble taxonomic assignments of amplicon sequencing data
in R using outputs of multiple taxonomic assignment algorithms and/or
reference databases. Includes flexible algorithms for mapping taxonomic
nomenclatures onto one another and for computing ensemble taxonomic
assignments.

Dylan Catlett

ensembleTax

Ensemble Taxonomic Assignments of Amplicon Sequencing Data

silva.nr.v138 function

^ dataframe with 6011 rows and 6 columns<dl class="dl-horizontal">
<dt>domain</dt><dd>domain assignments</dd>
<dt>phylum</dt><dd>phylum assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
</dl>

Format

All unique taxonomic assignments from the Silva SSU nr database v138 — silva.nr.v138

^ dataframe with 6011 rows and 6 columns<dl class='dl-horizontal'>
<dt>domain</dt><dd>domain assignments</dd>
<dt>phylum</dt><dd>phylum assignments</dd>
<dt>class</dt><dd>class assignments</dd>
<dt>order</dt><dd>order assignments</dd>
<dt>family</dt><dd>family assignments</dd>
<dt>genus</dt><dd>genus assignments</dd>
</dl>

silva.nr.v138: All unique taxonomic assignments from the Silva SSU nr database v138

Description

Usage

Arguments

Format