hg38

wget https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz

datasets

Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package. The datasets were originally downloaded from <https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz> and <https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz> and converted into the format required by the 'topr' package. See <https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human> to see the required format.

Thorhildur Juliusdottir

enshuman

Human Gene Annotation Data from 'Ensembl'

hg38 function

A data frame with 41,016 rows and 7 variables:<dl>
<dt>chrom</dt>
<dd>chromosome</dd><dt>gene_start</dt>
<dd>genetic position of gene start</dd><dt>gene_end</dt>
<dd>genetic position of gene end</dd><dt>gene_symbol</dt>
<dd>the name of the gene</dd><dt>biotype</dt>
<dd>the biotype of the gene</dd><dt>exon_chromstart</dt>
<dd>genetic positions of exon start</dd><dt>exon_chromend</dt>
<dd>genetic position of exon end</dd>
</dl>

Format

Ensembl genes build GRCh38.111 — hg38

A data frame with 41,016 rows and 7 variables:<dl>
<dt>chrom</dt>
<dd>chromosome</dd>

<dt>gene_start</dt>
<dd>genetic position of gene start</dd>

<dt>gene_end</dt>
<dd>genetic position of gene end</dd>

<dt>gene_symbol</dt>
<dd>the name of the gene</dd>

<dt>biotype</dt>
<dd>the biotype of the gene</dd>

<dt>exon_chromstart</dt>
<dd>genetic positions of exon start</dd>

<dt>exon_chromend</dt>
<dd>genetic position of exon end</dd>


</dl>

hg38: Ensembl genes build GRCh38.111

Description

Usage

Arguments

Format