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entropart (version 1.1.1)

Entropy partitioning to measure diversity

Description

Measurement and partitioning of diversity, based on Tsallis entropy.

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Version

Install

install.packages('entropart')

Monthly Downloads

675

Version

1.1.1

License

GNU General Public License

Maintainer

Eric Marcon

Last Published

September 10th, 2013

Functions in entropart (1.1.1)

AlphaDiversity

Unbiased alpha diversity of a metacommunity
DivProfile

Diversity Profile of a metacommunity
DivPart

Diversity Partition of a metacommunity
AlphaEntropy

Unbiased alpha entropy of a metacommunity
BetaDiversity

Unbiased beta diversity of a metacommunity
Paracou618.Functional

Functional tree of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
CheckentropartArguments

Checks the arguments of a function of the package entropart
Diversity

Generalized diversity of a community
EightSpTree

Functional tree with 8 species.
PhyloApply

Apply a Function over a Phylogenetic Tree
Paracou618.Taxonomy

Taxonomy (Family - Genus - Species) of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
CommunityProfile

Diversity or Entropy Profile of a community
PhyloBetaEntropy

Phylogenetic Beta Entropy of a community
MetaCommunity

Metacommunity class
Rao

Rao Quadratic Entropy of a Community
PhyloDiversity

Phylogenetic Diversity of a Community
KLq

Generalized Kullback-Leibler divergence
Paracou618.MC

Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
PPtree

Preprocessed Trees.
plot.PhyloValue

Plot phylogenetic entropy of diversity.
TsallisBeta

Tsallis beta entropy of a community
BetaEntropy

Unbiased beta entropy of a metacommunity
SimpsonBeta

Simpson beta entropy of a community
Originality.Species

Originality of species
Preprocess.MC

Preprocessing of metacommunity data
Hqz

Similarity-based entropy of a community
EightSpAbundance

Abundances of 8 species to run examples.
Shannon

Shannon entropy of a community
entropart-package

Entropy partitioning to measure diversity
Simpson

Simpson entropy of a community
ShannonBeta

Shannon beta entropy of a community
GammaDiversity

Unbiased gamma diversity of a metacommunity
PhyloEntropy

Phylogenetic Entropy of a community
MCentropy

Meta-Community entropy class.
expq

Exponential of order q
Coverage

Sample coverage of a community
Dqz

Similarity-based diversity of a community
lnq

Logarithm of order q
PDFD

Phylogenetic Diversity / Functional Diversity of a Community
Preprocess.Tree

Preprocessing of a phylogenetic tree
ChaoPD

Phylogenetic Diversity of a Community
DivEst

Diversity Estimation of a metacommunity
GammaEntropy

Unbiased gamma entropy of a metacommunity
Enq

Grassberger's expectation of n^q
MCdiversity

Meta-Community diversity class.
Tsallis

Tsallis Entropy of a community
AllenH

Phylogenetic Entropy of a Community