Preprocess.Tree

An object of class <code><a rd-options="" href="/link/hclust?package=entropart&version=1.6-7" data-mini-rdoc="entropart::hclust">hclust</a></code>, <code><a rd-options="" href="/link/phylo?package=entropart&version=1.6-7" data-mini-rdoc="entropart::phylo">phylo</a></code> or <code><a rd-options="" href="/link/phylog?package=entropart&version=1.6-7" data-mini-rdoc="entropart::phylog">phylog</a></code>. The tree must be ultrametric.

Tree

Calculates cuts and intervals of a phylogenetic tree and make it available both in <code><a rd-options="" href="/link/hclust?package=entropart&version=1.6-7" data-mini-rdoc="entropart::hclust">hclust</a></code> and <code><a rd-options="" href="/link/phylo?package=entropart&version=1.6-7" data-mini-rdoc="entropart::phylo">phylo</a></code> formats.

internal

Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>.
'entropart' provides functions to calculate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
Estimation-bias corrections are available.

Eric Marcon

entropart

Entropy Partitioning to Measure Diversity

Bruno Herault

Preprocess.Tree function

An object of class <code><a rd-options='' href='hclust'>hclust</a></code>, <code><a rd-options='' href='phylo'>phylo</a></code> or <code><a rd-options='' href='phylog'>phylog</a></code>. The tree must be ultrametric.

Calculates cuts and intervals of a phylogenetic tree and make it available both in <code><a rd-options='' href='hclust'>hclust</a></code> and <code><a rd-options='' href='phylo'>phylo</a></code> formats.

Preprocess.Tree: Preprocessing of a phylogenetic tree

Description

Usage

Arguments

Value

Details