enve.recplot2.findPeaks

Identifies peaks in the population histogram potentially indicating
sub-population mixtures.

A collection of functions for microbial ecology and other
applications of genomics and metagenomics. Companion package for the
Enveomics Collection (Rodriguez-R, L.M. and Konstantinidis, K.T., 2016
<DOI:10.7287/peerj.preprints.1900v1>).

Luis M RodriguezR

enveomics.R

Various Utilities for Microbial Genomics and Metagenomics

Luis M. Rodriguez-R

enve.recplot2.findPeaks function

<dl><dt>x</dt>
<dd>An <code>enve.RecPlot2</code> object.</dd>
<dt>method</dt>
<dd>Peak-finder method. This should be one of:<ul>
<li>emauto
 (Expectation-Maximization with auto-selection of components)</li>
<li>em
 (Expectation-Maximization)</li>
<li>mower
 (Custom distribution-mowing method)</li>
</ul></dd>
<dt>...</dt>
<dd>Any additional parameters supported by
<code>enve.recplot2.findPeaks</code>.</dd></dl>

Arguments

Author

Enveomics: Recruitment Plot (2) Peak Finder — enve.recplot2.findPeaks

<dl>

<dt>x</dt>
<dd>An <code>enve.RecPlot2</code> object.</dd>


<dt>method</dt>
<dd>Peak-finder method. This should be one of:<ul>
<li>emauto
 (Expectation-Maximization with auto-selection of components)</li>
<li>em
 (Expectation-Maximization)</li>
<li>mower
 (Custom distribution-mowing method)</li>
</ul></dd>


<dt>...</dt>
<dd>Any additional parameters supported by
<code>enve.recplot2.findPeaks</code>.</dd>

</dl>

enve.recplot2.findPeaks: Enveomics: Recruitment Plot (2) Peak Finder

Description

Usage

Value

Arguments

Author