enveomics.R (version 1.9.1)

enve.recplot2.findPeaks.__mow_one: Enveomics: Recruitment Plot (2) Mowing Peak Finder - Internal Ancillary Function 1

Description

Internal ancillary function (see enve.recplot2.findPeaks.mower).

Usage

enve.recplot2.findPeaks.__mow_one(
  lsd1,
  min.points,
  quant.est,
  mlv.opts,
  fitdist.opts,
  with.skewness,
  optim.rounds,
  optim.epsilon,
  n.total,
  merge.logdist,
  verbose,
  log
)

Value

Return an enve.RecPlot2.Peak object.

Arguments

lsd1

Vector of log-transformed sequencing depths

min.points

Minimum number of points

quant.est

Quantile estimate

mlv.opts

List of options for mlv

fitdist.opts

List of options for fitdist

with.skewness

If skewed-normal should be used

optim.rounds

Maximum number of optimization rounds

optim.epsilon

Minimum difference considered negligible

n.total

Global number of windows

merge.logdist

Attempted merge.logdist parameter

verbose

If verbose

log

If log-transformed depths

Author

Luis M. Rodriguez-R [aut, cre]