enve.recplot2.seqdepth

Calculate the sequencing depth of the given window(s).

A collection of functions for microbial ecology and other
applications of genomics and metagenomics. Companion package for the
Enveomics Collection (Rodriguez-R, L.M. and Konstantinidis, K.T., 2016
<DOI:10.7287/peerj.preprints.1900v1>).

Luis M RodriguezR

enveomics.R

Various Utilities for Microbial Genomics and Metagenomics

Luis M. Rodriguez-R

enve.recplot2.seqdepth function

<dl><dt>x</dt>
<dd><code>enve.RecPlot2</code> object.</dd>
<dt>sel</dt>
<dd>Window(s) for which the sequencing depth is to be calculated. If not
passed, it returns the sequencing depth of all windows.</dd>
<dt>low.identity</dt>
<dd>A logical indicating if the sequencing depth is to be estimated only
with low-identity matches. By default, only high-identity matches are
used.</dd></dl>

Arguments

Author

Enveomics: Recruitment Plot (2) Sequencing Depth — enve.recplot2.seqdepth

<dl>

<dt>x</dt>
<dd><code>enve.RecPlot2</code> object.</dd>


<dt>sel</dt>
<dd>Window(s) for which the sequencing depth is to be calculated. If not
passed, it returns the sequencing depth of all windows.</dd>


<dt>low.identity</dt>
<dd>A logical indicating if the sequencing depth is to be estimated only
with low-identity matches. By default, only high-identity matches are
used.</dd>

</dl>

enve.recplot2.seqdepth: Enveomics: Recruitment Plot (2) Sequencing Depth

Description

Usage

Value

Arguments

Author