enviGCMS (version 0.6.6)

plotmr: plot the scatter plot for peaks list with threshold

Description

plot the scatter plot for peaks list with threshold

Usage

plotmr(
  list,
  rt = NULL,
  ms = NULL,
  inscf = 5,
  rsdcf = 30,
  imputation = "l",
  ...
)

Value

data fit the cutoff

Arguments

list

list with data as peaks list, mz, rt and group information

rt

vector range of the retention time

ms

vector vector range of the m/z

inscf

Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5

rsdcf

the rsd cutoff of all peaks in all group, default 30

imputation

parameters for `getimputation` function method

...

parameters for `plot` function

Examples

data(list)
plotmr(list)