epade (version 0.2.2)

box.plot.ade: Boxplot

Description

Draw a box, a violin, a box-percentile and more plots for subgroups

Usage

box.plot.ade(x, group=NULL, group2=NULL, data=NULL, vnames=NULL,
             main=NULL, xlab=NULL, ylab=NULL, ylim=NULL, yticks=NULL,
             col=NULL, tcol=NULL, bgcol=NULL, lcol=NULL, pdigs=4, alpha=NULL,
             cex=1, cex.axis=1, lwd=2, h=NULL, lty=2, test=FALSE,
             varwidth=TRUE, means=FALSE, count=TRUE, zylinder=FALSE,
             twoside=TRUE, outlier=TRUE, wall=0, type='box')

Arguments

x

• a numeric vector of values

a character string with the name of the variable in the data.frame a formula x~group or x~group+group2

item

• group
• a character string with the name of the group variable in the data.frame
• group2
• a character string with the name of the group2 variable in the data.frame
• data
• vnames
• main
• xlab
• ylab
• ylim
• yticks
• col
• tcol
• bgcol
• lcol
• pdigs
• alpha
• cex
• cex.axis
• lwd
• h
• lty
• test
• varwidth
• means
• count
• a string to replace N with it, if you use "?" in you string in will be replaced with N.
• a vector of strings to replace N with it, if you use "?" in you strings in will be replaced with N.
• zylinder
• twoside
• outlier
• wall
• type
• "violin" for a violinplot
• "sd" for mean and one sd interval
• "2sd" for mean and one, two sd intervals
• "percentile" for a box-percentile plot
• "iqr" for a IQR plot

itemize

• "boxplot" for a normal boxplot

Details

it test for difference with T-test or U-test depends on the skewness <= 1="" or="">1. For a trend it perform a Jonckheere-Terpstra trend test.

Examples

x<-rnorm(1000)
g<-round(runif(1000))
g2<-round(runif(1000))
box.plot.ade(x, g, g2, vnames=list(c("subgroup 1","subgroup 2"),
c("group 1", "group 2")), wall=0, count='N: ?', means=TRUE)
box.plot.ade(x, g, g2, vnames=list(c("subgroup 1","subgroup 2"),
c("group 1", "group 2")), wall=1, type="violin")
box.plot.ade(x, g, g2, vnames=list(c("subgroup 1","subgroup 2"),
c("group 1", "group 2")), wall=2, type="percentile")
box.plot.ade(x, g, g2, vnames=list(c("subgroup 1","subgroup 2"),
c("group 1", "group 2")), wall=3, type="sd")