epi2me2r (version 0.1.0)

generate_amr_taxonomy: Generates a taxonomy file for AMR count table

Description

Generates a taxonomy file for AMR count table

Arguments

amr.count.table

count of AMR genes with CVTERMID in the first row and samples on columns

verbose

TRUE or FALSE: whether to keep all columns of AMR gene information or not. Default FALSE.

Value

data table of taxonomy of AMR genes in count table

Examples

# NOT RUN {
generate_amr_taxonomy(amr.count.table = amr.count.table, verbose = FALSE)
# }