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epidm (version 1.0.4)

specimen_type_grouping: Specimen type grouping

Description

In order to help clean up an analysis based on a group of specimen types, a lookup table has been created to help group sampling sites. This is a manually updated list. If there are organisms missing, or new respeciates to be added, please raise and issue or push request on the epidm GitHub

Usage

specimen_type_grouping

Arguments

Format

specimen_type

The primary specimen type with detail

specimen_group

A simple grouping of like specimen sites