epifitter (version 0.3.0)

AUDPC: Area under disease progress curve

Description

Calculates the area under disease progress curves.

Usage

AUDPC(time, y, y_proportion = TRUE, type = "absolute")

Arguments

time

A vector object of time.

y

A vector object of disease intensity.

y_proportion

Logical. If disease intensity is proportion (TRUE) or percentage(FALSE).

type

Set if is absolute or relative AUDPC. type = "absolute" is default.

References

Madden, L. V., Hughes, G., and van den Bosch, F. 2007. The Study of Plant Disease Epidemics. American Phytopathological Society, St. Paul, MN.

Examples

# NOT RUN {
epi =  sim_logistic(N = 30, y0 = 0.01,dt = 5, r = 0.3, alpha = 0.5, n = 1)
AUDPC(time = epi$time, y = epi$y, y_proportion = TRUE)

# }