mappedReads:
Mapped reads obtained from a anti-histone ChIP-seq experiment.
Description
The GRangesList contains two elements:
"CEBPA_WT_1" and "CEBPA_KO_1". Both list elements are
GRanges objects storing mapped reads
from anti-H3K4me3 ChIP-seq experiments. The first sample was a
wild-type mouse cell line. The second sample was obtained from
the same cell line after CEPBA knock-out.
Usage
data(mappedReads)
Arguments
Format
A GRangesList with two
GRanges.
Details
Duplicated reads and reads mapping to more than one genomic location
were removed. Reads were extended to the estimated DNA fragment size
of 200bp towards the 3 prime end. Further, only reads lying within
certain regions of chromomse 1 were kept to reduce storage space.