niamey

A dataset containing the weekly incidence of measles in
Niamey, Niger during the 2003-04 outbreak

datasets

Functions, data sets and shiny apps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) <https://www.springer.com/gp/book/9783319974866>. The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course <https://www.coursera.org/learn/epidemics>.

Ottar Bjornstad

epimdr

Functions and Data for "Epidemics: Models and Data in R"

niamey function

A data frame with 31 rows and 13 variables:<dl class="dl-horizontal">
 <dt>absweek</dt><dd>week since beginning of outbreak</dd>
 <dt>week</dt><dd>week of the year</dd>
 <dt>tot_cases</dt><dd>weekly incidence for the whole city</dd>
 <dt>tot_mort</dt><dd>weekly deaths for the whole city</dd>
 <dt>lethality</dt><dd>weekly case fatality rate</dd>
 <dt>tot_attack</dt><dd>weekly attack rates for the whole city</dd>
 <dt>cases_1</dt><dd>weekly incidence for district 1</dd>
 <dt>attack_1</dt><dd>weekly attack rates for district 1</dd>
 <dt>cases_2</dt><dd>weekly incidence for district 2</dd>
 <dt>attack_2</dt><dd>weekly attack rates for district 2</dd>
 <dt>cases_3</dt><dd>weekly incidence for district 3</dd>
 <dt>attack_3</dt><dd>weekly attack rates for district 3</dd>
 <dt>cum_cases</dt><dd>weekly cumulative incidence for the whole city</dd>
</dl>

Format

Weekly measles incidence from 2003-04 in Niamey, Niger. — niamey

A data frame with 31 rows and 13 variables:<dl class='dl-horizontal'>
 <dt>absweek</dt><dd>week since beginning of outbreak</dd>
 <dt>week</dt><dd>week of the year</dd>
 <dt>tot_cases</dt><dd>weekly incidence for the whole city</dd>
 <dt>tot_mort</dt><dd>weekly deaths for the whole city</dd>
 <dt>lethality</dt><dd>weekly case fatality rate</dd>
 <dt>tot_attack</dt><dd>weekly attack rates for the whole city</dd>
 <dt>cases_1</dt><dd>weekly incidence for district 1</dd>
 <dt>attack_1</dt><dd>weekly attack rates for district 1</dd>
 <dt>cases_2</dt><dd>weekly incidence for district 2</dd>
 <dt>attack_2</dt><dd>weekly attack rates for district 2</dd>
 <dt>cases_3</dt><dd>weekly incidence for district 3</dd>
 <dt>attack_3</dt><dd>weekly attack rates for district 3</dd>
 <dt>cum_cases</dt><dd>weekly cumulative incidence for the whole city</dd>
</dl>

niamey: Weekly measles incidence from 2003-04 in Niamey, Niger.

Description

Usage

Arguments

Format