epinetr (version 0.96)

getAlleleFreqRun: Get allele frequencies.

Description

Get allele frequencies across a simulation run.

Usage

getAlleleFreqRun(pop)

Arguments

pop

a Population object as returned by a previous simulation run.

Value

Returns a matrix of allele frequencies, one generation per row.

Details

Retrieves the allele frequencies in each generation across a simulation run.

See Also

runSim

Examples

# NOT RUN {
# Construct a population with additive and epistatic effects
pop <- Population(
  popSize = 200, map = map100snp, QTL = 20,
  alleleFrequencies = runif(100),
  broadH2 = 0.9, narrowh2 = 0.6, traitVar = 40
)
pop <- addEffects(pop)
pop <- attachEpiNet(pop)

# Run the simulator
pop2 <- runSim(pop, generations = 150)

af <- getAlleleFreqRun(pop2)
# }