plot.epi

A vector containing number of variables/markers in each group/chromosome. For example, the CviCol dataset that is provided in the package contains 5 chromosomes/ groups which the total number of markers is $p = 90$, where the first 24 markers belong into chromosome 1, the next 14 markers into chromosome 2, ..., and chromosome 5 contains 19 markers. Thus, n.mrkr = c(24,14,17,16,19). If <code>n.mrkr = NULL</code>, in the graph visualization all markers are represented same colour.

n.markers


Plot the graph path which is the output of two functions <code><a rd-options="" href="/link/epistasis?package=epistasis&version=0.0.1-1" data-mini-rdoc="epistasis::epistasis">epistasis</a></code>.


An efficient multi-core package to reconstruct an underlying network of
genomic signatures of high-dimensional epistatic selection from
partially observed genotype data. The phenotype that we consider is viability.
The network captures the conditional dependent short- and long-range linkage
disequilibrium structure of genomes and thus reveals aberrant marker-marker
associations that are due to epistatic selection. We target on high-dimensional
genotype data where number of variables (markers) is larger than number of
sample sizes (p >> n). The computations is memory-optimized using the sparse
matrix output.

Pariya Behrouzi

epistasis

Detecting Epistatic Selection with Partially Observed Genotype
Data

plot.epi function


Plot the graph path which is the output of two functions <code><a rd-options='' href='epistasis'>epistasis</a></code>.


plot.epi: plot for S3 class "epi"

Description

Usage

Arguments

References

See Also