plot.episelect

A vector containing number of variables/markers in each group/chromosome. For example, the CviCol dataset that is provided in the package contains 5 chromosomes/ groups which the total number of markers is $p = 90$, where the first 24 markers belong into chromosome 1, the next 14 markers into chromosome 2, ..., and chromosome 5 contains 19 markers. Thus, n.mrkr = c(24,14,17,16,19). If <code>n.mrkr = NULL</code>, in the graph visualization all markers are represented same colour.

n.markers

 The size of vertices in the graph visualization. The default value is 7.

vertex.size

 Assign names to the vertices. Default is FALSE.

vertex.label


Plot the optimal graph by model selection  


An efficient multi-core package to reconstruct an underlying network of
genomic signatures of high-dimensional epistatic selection from
partially observed genotype data. The phenotype that we consider is viability.
The network captures the conditional dependent short- and long-range linkage
disequilibrium structure of genomes and thus reveals aberrant marker-marker
associations that are due to epistatic selection. We target on high-dimensional
genotype data where number of variables (markers) is larger than number of
sample sizes (p >> n). The computations is memory-optimized using the sparse
matrix output.

plot.episelect: Plot function for S3 class "episelect"

Description

Usage

Arguments

References

See Also