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epitrix (version 0.2.2)

Small Helpers and Tricks for Epidemics Analysis

Description

A collection of small functions useful for epidemics analysis and infectious disease modelling. This includes computation of basic reproduction numbers from growth rates, generation of hashed labels to anonymise data, and fitting discretised Gamma distributions.

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Version

Install

install.packages('epitrix')

Monthly Downloads

519

Version

0.2.2

License

MIT + file LICENSE

Maintainer

Thibaut Jombart

Last Published

January 15th, 2019

Functions in epitrix (0.2.2)

r2R0

Transform a growth rate into a reproduction number
clean_labels

Standardise labels
hash_names

Anonymise data using scrypt
gamma_shapescale2mucv

Reparameterise Gamma distributions
fit_disc_gamma

Fit discretised distributions using ML