epitrix v0.2.2
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Small Helpers and Tricks for Epidemics Analysis
A collection of small functions useful for epidemics analysis and infectious disease modelling. This includes computation of basic reproduction numbers from growth rates, generation of hashed labels to anonymise data, and fitting discretised Gamma distributions.
Functions in epitrix
| Name | Description | |
| r2R0 | Transform a growth rate into a reproduction number | |
| clean_labels | Standardise labels | |
| hash_names | Anonymise data using scrypt | |
| gamma_shapescale2mucv | Reparameterise Gamma distributions | |
| fit_disc_gamma | Fit discretised distributions using ML | |
| No Results! | ||
Vignettes of epitrix
| Name | ||
| epitrix.Rmd | ||
| No Results! | ||
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Details
| License | MIT + file LICENSE |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 6.1.1 |
| URL | http://www.repidemicsconsortium.org/epitrix |
| BugReports | https://github.com/reconhub/epitrix/issues |
| VignetteBuilder | knitr |
| NeedsCompilation | no |
| Packaged | 2019-01-15 05:22:45 UTC; zhian |
| Repository | CRAN |
| Date/Publication | 2019-01-15 11:50:03 UTC |
| imports | distcrete , sodium , stringi |
| suggests | incidence (>= 1.4.1) , knitr , outbreaks , rmarkdown , roxygen2 , testthat |
| depends | R (>= 3.3.0) |
| Contributors | Dirk Schumacher, Anne Cori, Zhian N. Kamvar |
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