class:EpivizChart

EpivizChart-class

Encapsulate information about charts added to web app.

This package provides Websocket communication to the
epiviz web app (http://epiviz.cbcb.umd.edu) for interactive
visualization of genomic data. Objects in R/bioc interactive
sessions can be displayed in genome browser tracks or plots to
be explored by navigation through genomic regions. Fundamental
Bioconductor data structures are supported (e.g., GenomicRanges
and SummarizedExperiment objects), while providing an easy
mechanism to support other data structures. Visualizations
(using d3.js) can be easily added to the web app as well.

Hector Bravo

epivizr

R Interface to epiviz web app

EpivizChart-class function

<dl>
    <dt><code>measurements</code>:</dt><dd>List describing measurements displayed in chart.</dd> <dt><code>id</code>:</dt><dd>(character) id assigned by session manager to chart. Use <code>getId</code> method to get id.</dd> <dt><code>mgr</code>:</dt><dd>(<code><a rd-options="" href="/link/EpivizDeviceMgr?package=epivizr&version=1.4.6" data-mini-rdoc="epivizr::EpivizDeviceMgr">EpivizDeviceMgr</a></code>) session manager object.</dd> <dt><code>inDevice</code>:</dt><dd>(logical) <code>TRUE</code> if chart is defined within an <code><a rd-options="" href="/link/EpivizDevice-class?package=epivizr&version=1.4.6" data-mini-rdoc="epivizr::EpivizDevice-class">EpivizDevice-class</a></code> object.</dd> <dt><code>type</code>:</dt><dd>(character) chart type.</dd> </dl> 

Fields

<dl>
    <dt></dt><dd><code>setId(id)</code>:</dd>
set <code>id</code>. Internal use only.
    <dt></dt><dd><code>getId()</code>:</dd>
get <code>id</code>.
    <dt></dt><dd><code>setInDevice(x)</code>:</dd>
set <code>inDevice</code> field. Internal use only.
  </dl> 

EpivizChart-class: 'EpivizChart' objects

Description

Arguments

Fields

Methods