class:EpivizFeatureData

EpivizFeatureData-class

This package provides Websocket communication to the
epiviz web app (http://epiviz.cbcb.umd.edu) for interactive
visualization of genomic data. Objects in R/bioc interactive
sessions can be displayed in genome browser tracks or plots to
be explored by navigation through genomic regions. Fundamental
Bioconductor data structures are supported (e.g., GenomicRanges
and SummarizedExperiment objects), while providing an easy
mechanism to support other data structures. Visualizations
(using d3.js) can be easily added to the web app as well.

Hector Bravo

epivizr

R Interface to epiviz web app

EpivizFeatureData-class function

<dl>
    <dt><code>assay</code>:</dt><dd>(integer or character) indicating assay from which data is obtained</dd> </dl> 

Fields

<dl>
    <dt></dt><dd>
      <code>.checkColumns(columns)</code>: Checks <code>columns</code> are a subset of <code>names(colData(object))</code>.
    </dd> <dt></dt><dd>
      <code>.getColumns()</code>: Returns <code>names(colData(object))</code>.
    </dd> <dt></dt><dd>
      <code>plot()</code>: Calls the <code>scatterPlot</code> method of <code><a rd-options="" href="/link/EpivizDeviceMgr-class?package=epivizr&version=1.4.6" data-mini-rdoc="epivizr::EpivizDeviceMgr-class">EpivizDeviceMgr-class</a></code> with the first measurements in <code>columns</code> as <code>x</code> and <code>y</code>.
    </dd> <dt></dt><dd>
      <code>getMeasurements()</code>: Returns list describing data encapsulated in this object.
    </dd> </dl> 

EpivizFeatureData-class: 'EpivizFeatureData' objects

Description

Arguments

Fields

Methods

Details