class:EpivizDevice

EpivizDevice-class

Encapsulate both measurement and chart for display in epiviz web app

This package provides Websocket communication to the
epiviz web app (http://epiviz.cbcb.umd.edu) for interactive
visualization of genomic data. Objects in R/bioc interactive
sessions can be displayed in genome browser tracks or plots to
be explored by navigation through genomic regions. Fundamental
Bioconductor data structures are supported (e.g., GenomicRanges
and RangedSummarizedExperiment objects), while providing an easy
mechanism to support other data structures. Visualizations
(using d3.js) can be easily added to the web app as well.

Hector Bravo

epivizr

R Interface to epiviz web app

EpivizDevice-class function

<dl>
    <dt><code>msObject</code>:</dt><dd>(<code><a rd-options="" href="/link/EpivizData-class?package=epivizr&version=1.8.0" data-mini-rdoc="epivizr::EpivizData-class">EpivizData-class</a></code>) object encapsulating measuremnts.</dd> <dt><code>chartObject</code>:</dt><dd>(<code><a rd-options="" href="/link/EpivizChart-class?package=epivizr&version=1.8.0" data-mini-rdoc="epivizr::EpivizChart-class">EpivizChart-class</a></code>) object encapsulating a chart.</dd> <dt><code>id</code>:</dt><dd>(character) device id set by session manager. Use <code>getId</code> method to get id.</dd> </dl> 

Fields

<dl>
    <dt></dt><dd>
      <code>getMsObject()</code>: Return <code>msObject</code>.
    </dd> <dt></dt><dd>
      <code>getChartObject()</code>: Return <code>chartObject</code>.
    </dd> <dt></dt><dd>
      <code>getMsId()</code>: Return id of <code>msObject</code>.
    </dd> <dt></dt><dd>
      <code>getChartId()</code>: Return id of <code>chartObject</code>.
    </dd> <dt></dt><dd>
      <code>setId(id)</code>: Set device id. For internal use only.
    </dd> <dt></dt><dd>
      <code>getId()</code>: Return device object id.
    </dd> <dt></dt><dd>
      <code>update(newObject, sendRequest=TRUE)</code>: Update data object in <code>msObject</code>. Calls the <code>update</code> method of <code>msObject</code>.
    </dd> </dl> 

EpivizDevice-class: 'EpivizDevice' objects

Description

Arguments

Fields

Methods

Details