epivizr (version 1.8.0)

tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr.

Description

A RangedSummarizedExperiment object containing exon-level counts from RNAseq data from the TCGA project. Only exons in human chromosome 11 are included.

Usage

data(tcga_colon_expression)

Format

A RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(colonSE)

exon-level count matrix

colData(colonSE)

a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/

Examples

data(tcga_colon_expression)
show(colonSE)
table(colData(colonSE)$sample_type)