EpivizGeneInfoData

EpivizGeneInfoData-class

Used to serve data to gene annotation tracks. Wraps <code><a href="/link/GenomicRanges?package=epivizr&version=2.2.3" rd-options="" data-mini-rdoc="epivizr::GenomicRanges">GenomicRanges</a></code> objects.
Annotation obtained from columns <code>Gene</code> (gene symbols) and <code>Exons</code> (exon start and end locations).

This package provides connections to the
epiviz web app (http://epiviz.cbcb.umd.edu) for interactive
visualization of genomic data. Objects in R/bioc interactive
sessions can be displayed in genome browser tracks or plots to
be explored by navigation through genomic regions. Fundamental
Bioconductor data structures are supported (e.g., GenomicRanges
and RangedSummarizedExperiment objects), while providing an easy
mechanism to support other data structures (through package epivizrData).
Visualizations (using d3.js) can be easily added to the web app as well.

Hector Bravo

epivizr

R Interface to epiviz web app

EpivizGeneInfoData-class function

Used to serve data to gene annotation tracks. Wraps <code><a href="GenomicRanges" rd-options="">GenomicRanges</a></code> objects.
Annotation obtained from columns <code>Gene</code> (gene symbols) and <code>Exons</code> (exon start and end locations).

EpivizGeneInfoData-class: Container for gene annotation data

Description

Arguments

See Also