createBaseTable

Main function to call everything and produce the results

Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) <doi:10.4126/FRL01-006408558>, Mueller, Bernd et al. (2017) <doi:10.1007/978-3-319-58694-6_22>, Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) <doi:10.1007/978-3-030-43887-6_52>, and Mueller, Bernd et al. (2022) <doi:10.1186/s13326-021-00258-w>.

Bernd Mueller

epos

Epilepsy Ontologies' Similarities

createBaseTable function

<dl><dt>coocepso</dt>
<dd>list of drug names sorted by frequency co-occuring with EpSO</dd>
<dt>coocesso</dt>
<dd>list of drug names sorted by frequency co-occuring with ESSO</dd>
<dt>coocepi</dt>
<dd>list of drug names sorted by frequency co-occuring with EPILONT</dd>
<dt>coocepisem</dt>
<dd>list of drug names sorted by frequency co-occuring with EPISEM</dd>
<dt>coocfenics</dt>
<dd>list of drug names sorted by frequency co-occuring with FENICS</dd></dl>

Arguments

Main function to call everything and produce the results — createBaseTable

<dl>

<dt>coocepso</dt>
<dd>list of drug names sorted by frequency co-occuring with EpSO</dd>


<dt>coocesso</dt>
<dd>list of drug names sorted by frequency co-occuring with ESSO</dd>


<dt>coocepi</dt>
<dd>list of drug names sorted by frequency co-occuring with EPILONT</dd>


<dt>coocepisem</dt>
<dd>list of drug names sorted by frequency co-occuring with EPISEM</dd>


<dt>coocfenics</dt>
<dd>list of drug names sorted by frequency co-occuring with FENICS</dd>

</dl>

createBaseTable: Main function to call everything and produce the results

Description

Usage

Value

Arguments

Examples