MET.CTL.countDat


RNA-Seq count data from Methimazole and Control rat biological replicates


Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Sarah Munro

erccdashboard

Assess Differential Gene Expression Experiments with ERCC
Controls

MET.CTL.countDat function

A data frame with 16590 observations of the following 7 variables.
  <dl>
    <dt><code>Feature</code></dt><dd>a factor vector of all Endogenous and ERCC transcripts in the experiment</dd> <dt><code>MET_1</code></dt><dd>a numeric vector of counts from Methimazole treatment biological replicate 1</dd> <dt><code>MET_2</code></dt><dd>a numeric vector of counts from Methimazole treatment biological replicate 2</dd> <dt><code>MET_3</code></dt><dd>a numeric vector of counts from Methimazole treatment biological replicate 3</dd> <dt><code>CTL_1</code></dt><dd>a numeric vector of counts from Control biological replicate 1</dd> <dt><code>CTL_2</code></dt><dd>a numeric vector of counts from Control biological replicate 2</dd> <dt><code>CTL_3</code></dt><dd>a numeric vector of counts from Control biological replicate 3</dd> </dl> 

Format

RNA-Seq count data from Methimazole and Control rat biological replicates

MET.CTL.countDat: Rat toxicogenomics count data

Description

Arguments

Format