erccdashboard (version 1.6.0)

dynRangePlot: Produce signal-abundance plot to evaluate dynamic range

Description

Produce signal-abundance plot to evaluate dynamic range

Usage

dynRangePlot(exDat, allPoints, labelReps)

Arguments

exDat

list, contains input data and stores analysis results

allPoints

boolean, default is false, means of replicates will be plotted. If true then all replicates will be plotted as individual points.

labelReps

boolean, default is false. If true then replicates will be labeled.

Examples

data(SEQC.Example)

exDat <- initDat(datType="count", isNorm=FALSE, exTable=MET.CTL.countDat,
                 filenameRoot="testRun", sample1Name="MET",
                 sample2Name="CTL", erccmix="RatioPair",
                 erccdilution=1/100, spikeVol=1, totalRNAmass=0.500,
                 choseFDR=0.1)

exDat <- est_r_m(exDat)

exDat <- dynRangePlot(exDat, allPoints="FALSE", labelReps ="FALSE")

exDat$Figures$dynRangePlot